Butternut Squash Mac and Cheese with Crispy Sage

By Jessica Hylton - - Updated

Vegan Butternut Squash Mac and Cheese is a deliciously sweet take on a macaroni and cheese casserole that is vegan, gluten free and so creamy! 

Vegan butternut squash mac and cheese in a white ramekin and baking dish.

I’m kind of in love with butternut squash. Like, really in love. Top five reasons: they last forever (they can last from 1-3 months), they are super easy to cut and peel, and you can totally watch Devil Wears Prada for the 5th time without missing a beat, it’s even creamier than pumpkin (whaaat) and it’s sweet. SWEET. How can I not be on that? So my friends, with the salty crispy sage on top fulfilling your salty needs, I bring you a mac and cheese that’ll make your dessert get afraid because you’ve just satisfied your sweet and salty cravings in one dish. Let’s go.

Top down shot of mac and cheese in a ramekin.

I think we’ve all seen a butternut squash mac and cheese dish somewhere and been curious as to what it would taste like. Well, I’m here to tell you that it’s pretty amazing. This baby needs NO cheese. None, and you’re in creamy heaven. I know that I call my food my babies and it’s weird. Just stay with me here until the end. First, we crisp up the sage. The sage that transforms into a salty treat on its own that I had to literally restrain myself from finishing before the mac and cheese was finished. In a little coconut oil or vegan butter, crisped up, then on a paper towel. Add a teensy bit of salt and pepper to it to help bring out the flavours.

Next, we boil the butternut squash. Peel it, cut it into large chunks, then boil. Boil your pasta simultaneously in another pot. While it’s boiling, we prepare our little sauce of almond milk, coconut flour and some seasoning. Thicken it up, then add the butternut squash and get this – mash it with your wooden spoon or spatula fork. It’s that soft you don’t need any kind of other equipment for this recipe. Add your pasta, top with some gluten free crumbs, then bake this off for a couple minutes so everything comes together.

Vegan butternut squash mac and cheese in a ramekin with a fork.know the directions may seem like a lot, but I promise it isn’t difficult, it just requires a bit of concentration (please don’t watch Devil Wears Prada while you’re crisping the sage, for e.g., but have on in background).

This recipe is 35 minutes long plus a little extra time if you may have gasped again at the same scenes of Devil Wears Prada that you always gasp at, but I promise it’s nothing taxing. The beauty is that many dishes are being prepared at the same time without you actively doing anything to it. I definitely love the contrast of the sage with the butternut squash and would highly recommend that you add the sage on top. You can add as much as you want, or steal bits from others and put into your serving like I did.


Creamy, deliciousness. Okay, my vocabulary is officially at rock bottom by this point so I’m just going to let you enjoy this dish. Perfect for these fall nights we are having!! Happy Friday y’all!

Mac and cheese in a white pot.


Fork digging into bowl of baked pumpkin mac and cheese.

Baked Pumpkin Mac and Cheese

Baked mac and cheese with sage.

Butternut Squash Mac and Cheese with Crispy Sage

Vegan Butternut Squash Mac and Cheese is a deliciously sweet take on a macaroni and cheese casserole that is gluten free and so creamy!  You'll love this easy dinner recipe!
by: Jessica in the Kitchen
Prep Time 15 minutes
Cook Time 20 minutes
Total Time 35 minutes
Servings 9 servings
Course Dinner
Cuisine American
  • 1 bunch fresh sage stems removed
  • 1/2 medium Butternut Squash peeled, seeds removed and chopped into large chunks
  • 8 ounces pasta regular or gluten free
  • 2 tablespoons vegan butter I like Earth Balance's spread or coconut oil
  • 2 tablespoons flour regular or coconut flour if needed
  • 1 cup vegan milk any vegan milk works
  • ½ cup nutritional yeast
  • ¼ cup panko breadcrumbs + 2 teaspoons of olive oil gluten free if needed
  • ¾ teaspoon sea salt
  • ¾ teaspoon ground black pepper


  • Preheat the oven to 425°F. Bring two pots of salted water to a boil. Add the butternut squash to one, cook for 10 minutes or until fork soft.
  • Add the pasta to the other (cook pasta according to directions on the box). If it's finished cooking before you have finished the sauce, removed from heat, drain, keeping 1/2 cup pasta water and let stand until you're ready to use it.
  • In a large pan, melt the vegan butter or coconut oil on medium-high. Add the sage leaves and cook for 1 minute, watching carefully so the butter/oil doesn't burn, until crispy. Transfer to a paper-towel-lined plate, and season with a pinch of salt and 1/4 teaspoon ground black pepper. Don't throw out the butter/oil!
  • In the same pan over medium heat with the leftover butter/oil, add the coconut flour and whisk, then cook for about 1 minute until it comes together. Add almond milk and whisk until it is lump free. Reduce the heat to low and season with the 1/4 teaspoon salt and 1/4 teaspoon ground black pepper. Simmer for 2 to 3 minutes, stirring until the sauce starts to thicken, then remove from heat.
  • Transfer butternut squash into the sauce and using a fork, mash it into the sauce until combined.
  • Transfer the drained pasta, reserved pasta water, and nutritional yeast squash and sauce mixture. Stir until well combined.
  • Transfer the pasta mixture into a greased baking dish. Combine the breadcrumbs and olive oil to moisten them, then season them with remaining salt and pepper. Sprinkle the moistened crumbs in a single layer over the dish. Bake 5 to 7 minutes, or until golden brown and bubbly.
  • Crumble the crispy sage over the top. Enjoy!
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If you try this Butternut Squash Mac and Cheese please let me know in the comment section below, or tag me on instagram with the hashtag #jessicainthekitchen! For more exclusive recipes follow me on Instagram AND on Snapchat: jessinkitchen.


Calories: 154kcal | Carbohydrates: 27g | Protein: 5g | Fat: 4g | Saturated Fat: 1g | Sodium: 269mg | Potassium: 196mg | Fiber: 3g | Sugar: 1g | Vitamin A: 4548IU | Vitamin C: 9mg | Calcium: 58mg | Iron: 1mg
by Jessica

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Recipe Rating


  1. Evelyn says:

    I made mine with half a butternut squash and it turned out perfectly fine. Maybe you didn’t use enough almond milk.

  2. Jessica says:

    I am excited to try this recipe for a party today! I plan on doubling it and was hoping to bake it in a crockpot instead of the oven. Would you have any suggestions on how long and temp for using a crockpot?

  3. Theresa says:

    5 stars
    Delicious!! Made tonight in 4 mini casseroles and we all liked it. Even my non vegan teenage son. Granted I used regular flour and breadcrumbs but GF would be just as good for this. Was impressed how crispy the breadcrumbs with EVOO got in just 7 minutes in the oven.
    Thanks for posting! Looking forward to trying more.

    • Gavin | Jessica in the Kitchen says:

      Thank you so much Theresa! We’re happy that you enjoyed it.

  4. Theresa says:

    5 stars
    Also, I used a bag of frozen organic butternut squash and it made the prep of this so easy!!

  5. Chelsey Harmer says:

    5 stars
    This is my favorite vegan Mac recipe!! I love how the butternut squash tastes cheesy and the crispy sage is the best. I have brought this to several outings with vegan co workers and no one else knows it’s vegan!

    • Gavin | Jessica in the Kitchen says:

      We’re so happy that you enjoyed this recipe Chelsey! Thank you so much for reading and leaving such a nice comment!

  6. TheFlightSchool Mili says:

    5 stars
    Absolutely delicious meal. You couldn’t believe how creamy and rich the dish is using just butternut squash and very limited seasonings. I used Shells and added a bit of garlic powder as the only variant. We almost ate the whole tray and can’t wait to make it again. Also, even though you use a lot of pots/pans, you can clean as you go along while the pasta is in the oven baking. This one is a forever recipe thank you!!!!

  7. Amanda says:

    5 stars
    Delicious! What a perfect autumn dinner. This was easy to make after prepping all my ingredients, and it’s so yummy. I was wary of the crispy sage, but honestly that was the best part! I’ll definitely make this one again 😋


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